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Hydrogen, the Principal Agent of Structural and Chemical Diversity in Minerals

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Celebrating the International Year of Mineralogy

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Abstract

Hydrogen (both neutral H and H+) is the smallest element in the Periodic Table (Rahm et al., Chem Eur J 22(14):625–14,632, 2017) and small size and high volatility make it perhaps the most widely distributed element on Earth. Despite the fact that H constitutes less than 0.1% of the Earth by mass. It is capable of incorporation into the majority of minerals at a major level. Hydrogen occurs as a required constituent in ~60% of all minerals and plays a variety of roles that give rise to the complexity (sensu lato) and range of structure and chemical composition that is characteristic of oxide and oxysalt minerals in particular. Here I examine the diversity of mechanisms by which H is incorporated in minerals and the various ways in which H promotes stable atomic arrangements. I will use Φ to designate a ligand: Φ = O2–, (OH)–, F–, Cl–, (H2O)0 and I will write a polyhedron most generally as (MΦn) and more specifically by the central cation: thus the expression “Mg2+ octahedron” designates an (MgΦ6) octahedron.

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References

  • Akao M, Iwai S (1978) The hydrogen bonding of artinite. Acta Crystallogr B 33:3951–3953

    Google Scholar 

  • Atencio D, Chukanov NV, Nestola F, Witzke T, Coutinho JMV, Zadov AE, Contreira Filho RR, Färber G (2012) Mejillonesite, a new acid sodium, magnesium phosphate mineral, from Mejillones, Antofagasta, Chile. Am Min 97:19–25

    Google Scholar 

  • Baidina IA, Bakakin VV, Podberezskaya NV, Alekseev VI, Batsanova LR, Pavlyuchenko VS (1978) Crystal structure of beryllium fluoride borate. Zh Strukt Khim 19:125–129 (in Russian)

    Google Scholar 

  • Bell DR, Rossman GR (1992) Water in Earth’s mantle: the role of nominally anhydrous minerals. Science 255:1391–1397

    Google Scholar 

  • Bernardini S, Della Ventura G, Schluter JJ, Mihailova B (2022) Electron-phonon coupling in amphiboles contributes to the anomalous conductivity in subduction zones. https://doi.org/10.21203/rs.3.rs-1696117/v1

  • Brown ID (1976) On the geometry of O-H...O hydrogen bonds. Acta Crystallogr A 32:24–31

    Google Scholar 

  • Brown ID (1981) The bond-valence method: an empirical approach to chemical structure and bonding. In: O’Keeffe M, Navrotsky A (eds) Structure and Bonding in Crystals, vol 2. Academic Press, New York, pp 1–30

    Google Scholar 

  • Brown ID (2002) The chemical bond in inorganic chemistry. Oxford University Press, U.K, The Bond Valence Model

    Google Scholar 

  • Brown ID (2016) The chemical bond in inorganic chemistry. The Bond Valence Model. 2nd edition. Oxford University Press, U.K

    Google Scholar 

  • Brown ID, Altermatt D (1985) Bond-valence parameters obtained from a systematic analysis of the Inorganic Crystal Structure Database. Acta Crystallogr B 41:244–247

    Google Scholar 

  • Burns PC, Novák M, Hawthorne FC (1995) Fluorine-hydroxyl variation in hambergite: a crystal-structure study. Can Min 33:1205–1213

    Google Scholar 

  • Cámara F, Oberti R, Della Ventura G, Welch MD, Maresch WV (2004) The crystal-structure of synthetic NaNa2Mg5Si8O21(OH)3, a triclinic C-1 amphibole with a triple-cell and excess hydrogen. Am Min 89:1464–1473

    Google Scholar 

  • Chukanov NV, Britvin SN, Möhn G, Pekov IV, Zubkova NV, Nestola F, Kasatkin AV, Dini M (2015) Shilovite, natural copper(II) tetrammine nitrate, a new mineral species. Min Mag 79:613–623

    Google Scholar 

  • Cooper MA, Hawthorne FC, Abdu YA, Walford PC, Back ME (2019) Relative humidity as a driver of structural change in three new ferric-sulfate-tellurite hydrates: New minerals tamboite and metatamboite, and a lower-hydrate derivative, possibly involving direct uptake of atmospheric {H2O}4 clusters. Can Min 57:605–635

    Google Scholar 

  • Della Ventura G, Mihailova B, Susta U, Guidi MC, Marcelli A, Schluter J, Oberti R (2018) The dynamics of Fe oxidation in riebeckite: a model for amphiboles. Am Min 103:1103–1111

    Google Scholar 

  • Emsley J, Jones DJ, Lucas J (1981) Detecting and measuring strong hydrogen bonds: recent developments. Rev Inorg Chem 1981:105–140

    Google Scholar 

  • Ferraris G, Franchini-Angela M (1972) Survey of the geometry and environment of water molecules in crystalline hydrates studied by neutron diffraction. Acta Crystallogr B 28:3572–3583

    Google Scholar 

  • Ferraris G, lvaldi G (1984) X–OH and O–H...O bond lengths in protonated oxyanions. Acta Crystallogr B40:1–6

    Google Scholar 

  • Gagné O, Hawthorne FC (2015) Comprehensive derivation of bond-valence parameters for ion pairs involving oxygen. Acta Crystallogr B 71:562–578

    Google Scholar 

  • Gagné O, Hawthorne FC (2017) Empirical Lewis-acid strengths for 135 cations bonded to oxygen. Acta Crystallogr B 73:956–961

    Google Scholar 

  • Gagné O, Hawthorne FC (2018) Bond-length distributions for ions bonded to oxygen: Results for the non-metals and discussion of lone-pair stereoactivity and the polymerization of PO4. Acta Crystallogr B 74:79–96

    Google Scholar 

  • Gagné O, Mercier PHJ, Hawthorne FC (2018) A priori bond-valence and bond-length calculations in rock-forming minerals. Acta Crystallogr B 74:470–482

    Google Scholar 

  • Groat LA, Hawthorne FC, Ercit TS (1992a) The chemistry of vesuvianite. Can Min 30:19–48

    Google Scholar 

  • Groat LA, Hawthorne FC, Ercit TS (1992b) The role of fluorine in vesuvianite: a crystal-structure study. Can Min 30:1065–1075

    Google Scholar 

  • Groat LA, Hawthorne FC, Rossman GR, Ercit TS (1995) The infrared spectroscopy of vesuvianite in the OH region. Can Min 33:609–626

    Google Scholar 

  • Hawthorne FC (1992) The role of OH and H2O in oxide and oxysalt minerals. Z Kristallogr 201:183–206

    Google Scholar 

  • Hawthorne FC (1994) Structural aspects of oxides and oxysalt crystals. Acta Crystallogr B 50:481–510

    Google Scholar 

  • Hawthorne FC (1997) Short-range order in amphiboles: a bond-valence approach. Can Min 35:203–218

    Google Scholar 

  • Hawthorne FC (2012) A bond-topological approach to theoretical mineralogy: crystal structure, chemical composition and chemical reactions. Phys Chem Min 39:841–874

    Google Scholar 

  • Hawthorne FC (2014) The structure hierarchy hypothesis. Min Mag 78:957–1027

    Google Scholar 

  • Hawthorne FC (2015) Toward theoretical mineralogy: a bond-topological approach. Am Min 100:696–713

    Google Scholar 

  • Hawthorne FC, Černý P (1977) The alkali-metal positions in Cs–Li beryl. Can Min 15:414–421

    Google Scholar 

  • Hawthorne FC, Schindler M (2008) Understanding the weakly bonded constituents in oxysalt minerals. Z Kristallogr 223:41–68

    Google Scholar 

  • Hawthorne FC, Oberti R, Harlow GE, Maresch W, Martin RF, Schumacher JC, Welch MD (2012) Nomenclature of the amphibole super-group. Am Min 97:2031–2048

    Google Scholar 

  • Hawthorne FC, Hughes JM, Cooper MA, Kampf AR (2022) Bonding between the decavanadate polyanion and the interstitial complex in pascoite-family minerals. Can Min 60:341–359

    Google Scholar 

  • Huminicki DMC, Hawthorne FC (2002) The crystal chemistry of the phosphate minerals. In: Kohn MJ, Rakovan J, Hughes JM (eds) Phosphates: Geochemical, Geobiological, and Materials Importance, Reviews in Mineralogy and Geochemistry 48. Mineralogical Society of America, Washington DC, pp 123–253

    Google Scholar 

  • Ingri N (1963) Equilibrium studies of polyanions containing BIII, SiIV, GeIV and VV. Svensk Kem Tidskr 75:3–34

    Google Scholar 

  • Kampf AR, Hughes JM, Cooper MA, Hawthorne FC, Nash BP, Olds TA, Adams PM, Marty J (2021) The pascoite family of minerals, including the redefinition of rakovanite. Can Min 59:771–779

    Google Scholar 

  • Kolesnikov AI, Reiter GF, Choudhury N, Prisk TR, Mamontov E, Podlesnyak A, Ehlers G, Seel AG, Wesolowski DJ, Anovitz LM (2016) Quantum tunneling of water in beryl: A new state of the water molecule. Phys Rev Lett 116:167802

    Google Scholar 

  • Kolesnikov AI, Anovitz LM, Hawthorne FC, Podlesnyak A, Schenter GK (2019) Effect of fine-tuning pore structures on the dynamics of confined water. J Chem Phys 150:204706

    Google Scholar 

  • Lovelock JE, Margulis L (1973) Atmospheric homeostasis by and for the biosphere: the gaia hypothesis. Tellus 26(1–2):2–10

    Google Scholar 

  • Majzlan J, Plášil J, Dachs E, Benisek A, Koch CB (2016) Crystal chemistry, Mössbauer spectroscopy, and thermodynamic properties of botryogen. Neues Jb Miner Abh 193:147–159

    Google Scholar 

  • Matthews PC (1998) Vector calculus. Springer, London

    Google Scholar 

  • Mereiter K (1974) Die Kristallstruktur von Rhomboklas, H5O2{Fe[SO4]2·2 H2O}. Tscher Miner Petrogr Mitt 21:216–232

    Google Scholar 

  • Mihailova B, Della Ventura G, Waeselmann N, Xu W, Schlüter J, Galdenzi F, Marcelli A, Redhammer GJ, Boiocchi M, Oberti R (2021) Atomistic insight into lithospheric conductivity revealed by phonon-electron excitations in hydrous iron-bearing silicates. Commun Mater 2:57. https://doi.org/10.1038/s43246-021-00161-y

    Article  Google Scholar 

  • Mihailova B, Della Ventura G, Waeselmann N, Bernardini S, Xu W, Marcelli A (2022) Polarons in rock-forming minerals: physical implications. Condens Matter 7:68–80

    Google Scholar 

  • Milovanović MR, Ivana M, Stanković IM, Živković JM, Ninković DB, Hall MB, Zarić SD (2022) Water: new aspect of hydrogen bonding in the solid state. IUCrJ 9:639–647

    Google Scholar 

  • Oberti R, Boiocchi M, Zema N, Hawthorne FC, Redhammer GJ, Susta U, Della Ventura G (2018) The high-temperature behavior of riebeckite: expansivity, deprotonation, selective Fe oxidation and a novel cation disordering scheme for amphiboles. Eur J Min 30:437–449

    Google Scholar 

  • Perrin DD (1965) Dissociation constants of inorganic acids and bases in aqueous solution. Butterworths, London

    Google Scholar 

  • Peslier AH, Schönbächler M, Busemann H, Karato S-I (2017) Water in the Earth’s interior: distribution and origin. Space Sci Rev 212:743–810

    Google Scholar 

  • Preiser C, Lösel J, Brown ID, Kunz M, Skowron A (1999) Long range Coulomb forces and localized bonds. Acta Crystallogr B 55:698–711

    Google Scholar 

  • Rahm M, Hoffmann R, Ashcroft NW (2017) Atomic and ionic radii of the elements. Chem Eur J 22:14625–14632

    Google Scholar 

  • Rieder M, Cavazzini G, D’yakonov YS, Frank-Kamenetskii VA, Gottardi G, Guggenheim S, Müller G, Neiva AMR, Radoslovich EW, Robert JL, Sassi FP (1999) Nomenclature of the micas. Min Mag 63:267–296

    Google Scholar 

  • Ripmeester JA, Ratcliffe CI, Dutrizac JE, Jambor JL (1986) Hydronium ion in the alunite-jarosite group. Can Min 24:435–447

    Google Scholar 

  • Schindler M, Hawthorne FC (2001) A bond-valence approach to the structure, chemistry and paragenesis of hydroxy-hydrated oxysalt minerals: I. Theory. Can Min 39:1225–1242

    Google Scholar 

  • Schindler M, Hawthorne FC (2004) A bond-valence approach to the uranyl-oxide hydroxy-hydrate minerals: Chemical composition and occurrence. Can Min 42:1601–1627

    Google Scholar 

  • Schindler M, Hawthorne FC (2008) The stereochemistry and chemical composition of interstitial complexes in uranyl-oxysalt minerals. Can Min 46:467–501

    Google Scholar 

  • Schindler M, Huminicki DMC, Hawthorne FC (2006) Sulfate minerals: I. Bond topology and chemical composition. Can Min 44:1403–1429

    Google Scholar 

  • Smith JD, Cappa CD, Wilson KR, Cohen RC, Geissler PL, Saykally RJ (2005) Unified description of temperature-dependent hydrogen-bond rearrangements in liquid water. Proc Nat Acad Sci 102:14171–14174

    Google Scholar 

  • Sokolova E, Hawthorne FC, Pautov LA, Agakhanov AA (2010) Byzantievite, Ba5(Ca, REE, Y)22(Ti, Nb)18(SiO4)4[(PO4),(SiO4)]4(BO3)9O22[(OH), F]43(H2O)1.5; the crystal structure and crystal chemistry of the only known mineral with the oxyanions (BO3), (SiO4) and (PO4). Min Mag 74:285–308

    Google Scholar 

  • Stephens JS, Cruickshank DWJ (1970) The crystal structure of (CrO3)∞. Acta Crystallogr B 26:222–226

    Google Scholar 

  • Sutor DJ (1967) The crystal and molecular structure of newberyite, MgHPO4·3H2O. Acta Crystallogr 23:418–422

    Google Scholar 

  • Welch MD, Hawthorne FC, Cooper MA, Kyser TK (2001) Trivalent iodine in the crystal structure of schwartzembergite, Pb2+5I3+O6H2Cl2. Can Min 39:785–795

    Google Scholar 

  • Wilkins RWT, Sabine W (1973) Water content of some nominally anhydrous silicates. Am Min 58:508–516

    Google Scholar 

  • Wilson RJ (1979) Introduction to Graph Theory. Longman, London

    Google Scholar 

  • Wood DL, Nassau K (1968) The characterization of beryl and emerald by visible and infrared absorption spectroscopy. Am Min 53:777–800

    Google Scholar 

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Correspondence to Frank C. Hawthorne.

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Hawthorne, F.C. (2023). Hydrogen, the Principal Agent of Structural and Chemical Diversity in Minerals. In: Bindi, L., Cruciani, G. (eds) Celebrating the International Year of Mineralogy. Springer Mineralogy. Springer, Cham. https://doi.org/10.1007/978-3-031-28805-0_13

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