centos7 安装R语言遇到的各种坑

第一步，可以前往官网网址https://www.r-project.org/下载最新的软件包，我的是R-3.2.3.tar.gz，属于radhat版本。

第二步，解压缩，我也是按照网上的指导将压缩包放到/root目录下，然后解压缩，并进入R-3.2.3目录。

第三步，开始安装R语言：

[root@localhost R-3.2.3]# ./configure

（1）问题1：R语言依赖gcc、glibc-headers、gcc-c++、gcc-gfortran，因此需要部署

[root@localhost R-3.2.3]#yum -y install gcc

[root@localhost R-3.2.3]#yum install glibc-headers

[root@localhost R-3.2.3]# yum install gcc-c++

[root@localhost R-3.2.3]#yum install gcc-gfortran

（2）问题2：R语言安装依赖openjdk

[root@localhost R-3.2.3]#yum install java-1.8.0-openjdk-*

注解：在安装过程中，如果上述软件包没有安装的话，会不断有warning或者error提示，并且会提示相应的关键字。

解决以上两个问题之后就可以顺利的执行安装了，详细过程如下：

[root@localhost R-3.2.3]# ./configure

checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
loading site script './config.site'
loading build-specific script './config.site'
checking for pwd... /usr/bin/pwd
checking whether builddir is srcdir... yes
checking for working aclocal... missing
checking for working autoconf... missing
checking for working automake... missing
checking for working autoheader... missing
checking for gawk... gawk
checking whether ln -s works... yes
checking for bison... no
checking for byacc... no
checking for ar... ar
checking for a BSD-compatible install... /usr/bin/install -c
checking for sed... /usr/bin/sed
checking for which... /usr/bin/which
checking for less... /usr/bin/less
checking for gtar... /usr/bin/gtar
checking for tex... no
checking for pdftex... no
configure: WARNING: you cannot build PDF versions of the R manuals
checking for pdflatex... no
configure: WARNING: you cannot build PDF versions of vignettes and help pages
checking for makeindex... no
checking for texi2any... no
configure: WARNING: you cannot build info or HTML versions of the R manuals
checking for texi2dvi... no
checking for kpsewhich... no
checking for latex inconsolata package... checking for unzip... /usr/bin/unzip
checking for zip... /usr/bin/zip
checking for gzip... /usr/bin/gzip
checking for bzip2... /usr/bin/bzip2
checking for firefox... /usr/bin/firefox
using default browser ... /usr/bin/firefox
checking for acroread... no
checking for acroread4... no
checking for xdg-open... /usr/bin/xdg-open
checking for notangle... false
checking for realpath... /usr/bin/realpath
checking for pkg-config... /usr/bin/pkg-config
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking whether gcc needs -traditional... no
checking how to run the C preprocessor... gcc -E
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether __attribute__((visibility())) is supported... yes
checking whether gcc accepts -fvisibility... yes
checking whether gfortran accepts -fvisibility... yes
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for gcc... gcc
checking whether we are using the GNU Objective C compiler... no
checking whether gcc accepts -g... no
checking for Objective C++ compiler... trying some possibilities
checking whether g++ can compile ObjC++... no
checking whether  can compile ObjC++... no
no working ObjC++ compiler found
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU Fortran 77 compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for ld used by g++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for cos in -lm... yes
checking for sin in -lm... yes
checking for dlopen in -ldl... yes
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking for rl_callback_read_char in -lreadline... yes
checking for history_truncate_file... yes
checking whether rl_completion_matches exists and is declared... yes
checking for ANSI C header files... (cached) yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for sys/wait.h that is POSIX.1 compatible... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dl.h usability... no
checking dl.h presence... no
checking for dl.h... no
checking for dlfcn.h... (cached) yes
checking elf.h usability... yes
checking elf.h presence... yes
checking for elf.h... yes
checking features.h usability... yes
checking features.h presence... yes
checking for features.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking floatingpoint.h usability... no
checking floatingpoint.h presence... no
checking for floatingpoint.h... no
checking fpu_control.h usability... yes
checking fpu_control.h presence... yes
checking for fpu_control.h... yes
checking glob.h usability... yes
checking glob.h presence... yes
checking for glob.h... yes
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking langinfo.h usability... yes
checking langinfo.h presence... yes
checking for langinfo.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/stat.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/times.h usability... yes
checking sys/times.h presence... yes
checking for sys/times.h... yes
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking for unistd.h... (cached) yes
checking utime.h usability... yes
checking utime.h presence... yes
checking for utime.h... yes
checking stdalign.h usability... yes
checking stdalign.h presence... yes
checking for stdalign.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking for inttypes.h... (cached) yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking for stdint.h... (cached) yes
checking for string.h... (cached) yes
checking whether setjmp.h is POSIX.1 compatible... yes
checking whether sigsetjmp is declared... yes
checking whether siglongjmp is declared... yes
checking for GNU C library with version >= 2... yes
checking return type of signal handlers... void
checking for uint64_t... yes
checking for int64_t... yes
checking for int_fast64_t... yes
checking for pid_t... yes
checking for size_t... yes
checking whether SIZE_MAX is declared... yes
checking for blkcnt_t... yes
checking for type of socket length... socklen_t *
checking for stack_t... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking whether byte ordering is bigendian... no
checking for an ANSI C-conforming const... yes
checking for gcc option to accept ISO C99... -std=gnu99
checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99
checking for inline... inline
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of double... 8
checking size of size_t... 8
checking size of long double... 16
checking whether we can compute C Make dependencies... yes, using $(CC) -MM
checking whether gcc -std=gnu99 supports -c -o FILE.lo... yes
checking for gcc -std=gnu99 option to support OpenMP... -fopenmp
checking how to get verbose linking output from gfortran... -v
b/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../.. -lgfortran -lm -lquadmath
checking how to get verbose linking output from gcc -std=gnu99... -v
./lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../.. -lgcc_s
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore
checking whether gfortran appends underscores to external names... yes
checking whether gfortran appends extra underscores to external names... no
checking whether mixed C/Fortran code can be run... yes
checking whether gfortran and gcc -std=gnu99 agree on int and double... yes
checking whether gfortran and gcc -std=gnu99 agree on double complex... yes
checking for gfortran option to support OpenMP... -fopenmp
checking whether g++ accepts -M for generating dependencies... yes
checking for g++ option to support OpenMP... -fopenmp
checking whether we can compute ObjC Make dependencies... no
checking whether C runtime needs -D__NO_MATH_INLINES... no
checking for xmkmf... no
checking whether g++  supports C++11 features by default... no
checking whether g++  supports C++11 features with -std=c++11... yes
checking for off_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether alloca is declared... yes
checking whether expm1 exists and is declared... yes
checking whether hypot exists and is declared... yes
checking whether log1p exists and is declared... yes
checking whether log1pl exists and is declared... yes
checking whether log2 exists and is declared... yes
checking whether log10 exists and is declared... yes
checking whether nearbyint exists and is declared... yes
checking whether nearbyintl exists and is declared... yes
checking whether powl exists and is declared... yes
checking whether rint exists and is declared... yes
checking whether rintl exists and is declared... yes
checking whether va_copy exists and is declared... yes
checking for isblank... yes
checking sunmath.h usability... no
checking sunmath.h presence... no
checking for sunmath.h... no
checking for cospi in -lsunmath... no
checking for atanpi... no
checking for atan2pi... no
checking for cospi... no
checking for exp10... yes
checking for pown... no
checking for sinpi... no
checking for tanpi... no
checking for fseeko... yes
checking for ftello... yes
checking for matherr... yes
checking whether fcntl exists and is declared... yes
checking whether getgrgid exists and is declared... yes
checking whether getpwuid exists and is declared... yes
checking whether kill exists and is declared... yes
checking whether sigaction exists and is declared... yes
checking whether sigaltstack exists and is declared... yes
checking whether sigemptyset exists and is declared... yes
checking whether fdopen exists and is declared... yes
checking whether popen exists and is declared... yes
checking whether setenv exists and is declared... yes
checking whether unsetenv exists and is declared... yes
checking whether getrlimit exists and is declared... yes
checking whether getrusage exists and is declared... yes
checking whether getpriority exists and is declared... yes
checking whether chmod exists and is declared... yes
checking whether mkfifo exists and is declared... yes
checking whether stat exists and is declared... yes
checking whether umask exists and is declared... yes
checking whether gettimeofday exists and is declared... yes
checking whether utimes exists and is declared... yes
checking whether times exists and is declared... yes
checking whether gmtime_r exists and is declared... yes
checking whether localtime_r exists and is declared... yes
checking whether nl_langinfo exists and is declared... yes
checking whether access exists and is declared... yes
checking whether chdir exists and is declared... yes
checking whether execv exists and is declared... yes
checking whether ftruncate exists and is declared... yes
checking whether getcwd exists and is declared... yes
checking whether geteuid exists and is declared... yes
checking whether getuid exists and is declared... yes
checking whether link exists and is declared... yes
checking whether readlink exists and is declared... yes
checking whether symlink exists and is declared... yes
checking whether sysconf exists and is declared... yes
checking whether sched_setaffinity exists and is declared... yes
checking whether sched_getaffinity exists and is declared... yes
checking whether utime exists and is declared... yes
checking for clock_gettime in -lrt... yes
checking whether clock_gettime exists and is declared... yes
checking whether timespec_get exists and is declared... yes
checking for putenv... yes
checking whether putenv is declared... yes
checking for vasprintf... yes
checking whether vasprintf is declared... yes
checking for mempcpy... yes
checking for realpath... yes
checking whether realpath is declared... yes
checking whether glob exists and is declared... yes
checking for isnan... yes
checking whether isfinite is declared... yes
checking whether isnan is declared... yes
checking whether you have IEEE 754 floating-point arithmetic... yes
checking whether putenv("FOO") can unset an environment variable... yes
checking whether putenv("FOO=") can unset an environment variable... no
checking for nl_langinfo and CODESET... yes
checking for mkdtemp... yes
checking for strdup... yes
checking for strncasecmp... yes
checking whether mkdtemp is declared... yes
checking whether strdup is declared... yes
checking whether strncasecmp is declared... yes
checking for library containing connect... none required
checking for library containing gethostbyname... none required
checking for library containing xdr_string... none required
checking for __setfpucw... no
checking for working calloc... yes
checking for working isfinite... yes
checking for working log1p... yes
checking whether ftell works correctly on files opened for append... yes
checking for working sigaction... yes
checking whether mktime sets errno... no
checking whether mktime works correctly outside 1902-2037... yes
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for double complex... yes
checking whether C99 double complex is supported... yes
checking whether cabs exists and is declared... yes
checking whether carg exists and is declared... yes
checking whether cexp exists and is declared... yes
checking whether clog exists and is declared... yes
checking whether csqrt exists and is declared... yes
checking whether cpow exists and is declared... yes
checking whether ccos exists and is declared... yes
checking whether csin exists and is declared... yes
checking whether ctan exists and is declared... yes
checking whether cacos exists and is declared... yes
checking whether casin exists and is declared... yes
checking whether catan exists and is declared... yes
checking whether ccosh exists and is declared... yes
checking whether csinh exists and is declared... yes
checking whether ctanh exists and is declared... yes
checking whether 'struct tm' includes tm_zone... yes
checking whether 'struct tm' includes tm_gmtoff... yes
checking iconv.h usability... yes
checking iconv.h presence... yes
checking for iconv.h... yes
checking for iconv... yes
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes
checking for iconvlist... no
checking for iconv... yes
checking for iconv declaration...
e_t *outbytesleft);
checking wchar.h usability... yes
checking wchar.h presence... yes
checking for wchar.h... yes
checking wctype.h usability... yes
checking wctype.h presence... yes
checking for wctype.h... yes
checking whether mbrtowc exists and is declared... yes
checking whether wcrtomb exists and is declared... yes
checking whether wcscoll exists and is declared... yes
checking whether wcsftime exists and is declared... yes
checking whether wcstod exists and is declared... yes
checking whether mbstowcs exists and is declared... yes
checking whether wcstombs exists and is declared... yes
checking whether wctrans exists and is declared... yes
checking whether iswblank exists and is declared... yes
checking whether wctype exists and is declared... yes
checking whether iswctype exists and is declared... yes
checking for wctrans_t... yes
checking for mbstate_t... yes
checking for ICU... no
checking for X... libraries , headers
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Intrinsic.h usability... yes
checking X11/Intrinsic.h presence... yes
checking for X11/Intrinsic.h... yes
checking for XtToolkitInitialize in -lXt... yes
using X11 ... yes
checking for KeySym... yes
checking X11/Xmu/Atoms.h usability... no
checking X11/Xmu/Atoms.h presence... no
checking for X11/Xmu/Atoms.h... no
checking whether pkg-config knows about cairo and pango... no
checking whether pkg-config knows about cairo... no
checking for tclConfig.sh... no
checking for tclConfig.sh in library (sub)directories... no
checking for tkConfig.sh... no
checking for tkConfig.sh in library (sub)directories... no
checking for tcl.h... no
checking for BSD networking... yes
checking if jpeglib version >= 6b... yes
checking for jpeg_destroy_compress in -ljpeg... yes
checking for main in -lz... no
checking tiffio.h usability... no
checking tiffio.h presence... no
checking for tiffio.h... no
checking rpc/types.h usability... yes
checking rpc/types.h presence... yes
checking for rpc/types.h... yes
checking for rpc/xdr.h... yes
checking for XDR support... yes
checking for inflateInit2_ in -lz... no
checking whether zlib support needs to be compiled... yes
checking mmap support for zlib... yes
checking for BZ2_bzlibVersion in -lbz2... no
checking whether bzip2 support needs to be compiled... yes
checking for lzma_version_number in -llzma... no
checking for pcre_fullinfo in -lpcre... no
checking whether PCRE support needs to be compiled... yes
checking for curl-config... no
checking if libcurl version >= 7.28.0... no
checking whether leap seconds are treated according to POSIX... yes
checking for inline... inline
checking for sys/time.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for struct stat.st_atim.tv_nsec... yes
checking whether struct stat.st_atim is of type struct timespec... yes
checking for setitimer... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for _LARGEFILE_SOURCE value needed for large files... no
checking whether KERN_USRSTACK sysctl is supported... no
checking for visible __lib_stack_end... yes
checking for lpr... lpr
checking for paperconf... false
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for Fortran flag to compile .f90 files... none
checking for Fortran flag to compile .f95 files... none
checking for gfortran option to support OpenMP... -fopenmp
checking for recommended packages... yes
checking whether NLS is requested... yes

Configuring src/extra/intl directory
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking whether we are using the GNU C Library 2 or newer... yes
checking for ranlib... (cached) ranlib
checking for simple visibility declarations... yes
checking for stdint.h... yes
checking for getpagesize... yes
checking for working mmap... yes
checking whether integer division by zero raises SIGFPE... yes
checking for inttypes.h... yes
checking for unsigned long long int... yes
checking for inttypes.h... (cached) yes
checking whether the inttypes.h PRIxNN macros are broken... no
checking for ld used by gcc -std=gnu99... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for shared library run path origin... done
checking whether imported symbols can be declared weak... yes
checking for multithread API to use... none
checking argz.h usability... yes
checking argz.h presence... yes
checking for argz.h... yes
checking for inttypes.h... (cached) yes
checking for limits.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getcwd... yes
checking for getegid... yes
checking for geteuid... yes
checking for getgid... yes
checking for getuid... yes
checking for mempcpy... (cached) yes
checking for munmap... yes
checking for stpcpy... yes
checking for strcasecmp... yes
checking for strdup... (cached) yes
checking for strtoul... yes
checking for tsearch... yes
checking for argz_count... yes
checking for argz_stringify... yes
checking for argz_next... yes
checking for __fsetlocking... yes
checking whether feof_unlocked is declared... yes
checking whether fgets_unlocked is declared... yes
checking for iconv... (cached) yes
checking for iconv declaration... (cached)
e_t *outbytesleft);
checking for NL_LOCALE_NAME macro... yes
checking for bison... no
checking for long long int... yes
checking for long double... yes
checking for wchar_t... yes
checking for wint_t... yes
checking for intmax_t... yes
checking whether printf() supports POSIX/XSI format strings... yes
checking whether we are using the GNU C Library 2.1 or newer... yes
checking for stdint.h... (cached) yes
checking for SIZE_MAX... yes
checking for stdint.h... (cached) yes
checking for CFPreferencesCopyAppValue... no
checking for CFLocaleCopyCurrent... no
checking for ptrdiff_t... yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for asprintf... yes
checking for fwprintf... yes
checking for putenv... (cached) yes
checking for setenv... yes
checking for setlocale... yes
checking for snprintf... yes
checking for wcslen... yes
checking whether _snprintf is declared... no
checking whether _snwprintf is declared... no
checking whether getc_unlocked is declared... yes
checking for nl_langinfo and CODESET... (cached) yes
checking for LC_MESSAGES... yes
checking for CFPreferencesCopyAppValue... (cached) no
checking for CFLocaleCopyCurrent... (cached) no
checking whether included gettext is requested... no
checking for GNU gettext in libc... yes
checking whether to use NLS... yes
checking where the gettext function comes from... libc
Finished configuring src/extra/intl directory

using as R_SHELL for scripts ... /bin/sh
configure: creating ./config.status
config.status: creating Makeconf
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating doc/html/Makefile
config.status: creating doc/manual/Makefile
config.status: creating etc/Makefile
config.status: creating etc/Makeconf
config.status: creating etc/Renviron
config.status: creating etc/javaconf
config.status: creating etc/ldpaths
config.status: creating m4/Makefile
config.status: creating po/Makefile
config.status: creating share/Makefile
config.status: creating src/Makefile
config.status: creating src/appl/Makefile
config.status: creating src/extra/Makefile
config.status: creating src/extra/blas/Makefile
config.status: creating src/extra/bzip2/Makefile
config.status: creating src/extra/intl/Makefile
config.status: creating src/extra/pcre/Makefile
config.status: creating src/extra/tre/Makefile
config.status: creating src/extra/tzone/Makefile
config.status: creating src/extra/xdr/Makefile
config.status: creating src/extra/xz/Makefile
config.status: creating src/extra/zlib/Makefile
config.status: creating src/include/Makefile
config.status: creating src/include/Rmath.h0
config.status: creating src/include/R_ext/Makefile
config.status: creating src/library/Recommended/Makefile
config.status: creating src/library/Makefile
config.status: creating src/library/base/DESCRIPTION
config.status: creating src/library/base/Makefile
config.status: creating src/library/compiler/DESCRIPTION
config.status: creating src/library/compiler/Makefile
config.status: creating src/library/datasets/DESCRIPTION
config.status: creating src/library/datasets/Makefile
config.status: creating src/library/graphics/DESCRIPTION
config.status: creating src/library/graphics/Makefile
config.status: creating src/library/graphics/src/Makefile
config.status: creating src/library/grDevices/DESCRIPTION
config.status: creating src/library/grDevices/Makefile
config.status: creating src/library/grDevices/src/Makefile
config.status: creating src/library/grDevices/src/cairo/Makefile
config.status: creating src/library/grid/DESCRIPTION
config.status: creating src/library/grid/Makefile
config.status: creating src/library/grid/src/Makefile
config.status: creating src/library/methods/DESCRIPTION
config.status: creating src/library/methods/Makefile
config.status: creating src/library/methods/src/Makefile
config.status: creating src/library/parallel/DESCRIPTION
config.status: creating src/library/parallel/Makefile
config.status: creating src/library/parallel/src/Makefile
config.status: creating src/library/profile/Makefile
config.status: creating src/library/stats/DESCRIPTION
config.status: creating src/library/stats/Makefile
config.status: creating src/library/stats/src/Makefile
config.status: creating src/library/stats4/DESCRIPTION
config.status: creating src/library/stats4/Makefile
config.status: creating src/library/splines/DESCRIPTION
config.status: creating src/library/splines/Makefile
config.status: creating src/library/splines/src/Makefile
config.status: creating src/library/tcltk/DESCRIPTION
config.status: creating src/library/tcltk/Makefile
config.status: creating src/library/tcltk/src/Makefile
config.status: creating src/library/tools/DESCRIPTION
config.status: creating src/library/tools/Makefile
config.status: creating src/library/tools/src/Makefile
config.status: creating src/library/translations/DESCRIPTION
config.status: creating src/library/translations/Makefile
config.status: creating src/library/utils/DESCRIPTION
config.status: creating src/library/utils/Makefile
config.status: creating src/library/utils/src/Makefile
config.status: creating src/main/Makefile
config.status: creating src/modules/Makefile
config.status: creating src/modules/X11/Makefile
config.status: creating src/modules/internet/Makefile
config.status: creating src/modules/lapack/Makefile
config.status: creating src/nmath/Makefile
config.status: creating src/nmath/standalone/Makefile
config.status: creating src/scripts/Makefile
config.status: creating src/scripts/R.sh
config.status: creating src/scripts/Rcmd
config.status: creating src/scripts/f77_f2c
config.status: creating src/scripts/javareconf
config.status: creating src/scripts/mkinstalldirs
config.status: creating src/scripts/pager
config.status: creating src/scripts/rtags
config.status: creating src/unix/Makefile
config.status: creating tests/Makefile
config.status: creating tests/Embedding/Makefile
config.status: creating tests/Examples/Makefile
config.status: creating tools/Makefile
config.status: creating src/include/config.h
config.status: src/include/config.h is unchanged
config.status: executing libtool commands
config.status: executing stamp-h commands

R is now configured for x86_64-pc-linux-gnu

  Source directory:          .
  Installation directory:    /usr/local

  C compiler:                gcc -std=gnu99  -g -O2
  Fortran 77 compiler:       gfortran  -g -O2

  C++ compiler:              g++  -g -O2
  C++ 11 compiler:           g++  -std=c++11 -g -O2
  Fortran 90/95 compiler:    gfortran -g -O2
  Obj-C compiler:          

  Interfaces supported:      X11
  External libraries:        readline
  Additional capabilities:   JPEG, NLS
  Options enabled:           shared BLAS, R profiling

  Capabilities skipped:      PNG, TIFF, cairo, ICU
  Options not enabled:       memory profiling

  Recommended packages:      yes
//忽略此处告警
configure: WARNING: you cannot build info or HTML versions of the R manuals
configure: WARNING: you cannot build PDF versions of the R manuals
configure: WARNING: you cannot build PDF versions of vignettes and help pages
[root@localhost R-3.2.3]# make
make[1]: Entering directory `/root/R-3.2.3/m4'
make[1]: Nothing to be done for `R'.
make[1]: Leaving directory `/root/R-3.2.3/m4'
make[1]: Entering directory `/root/R-3.2.3/tools'
make[1]: Nothing to be done for `R'.
make[1]: Leaving directory `/root/R-3.2.3/tools'
make[1]: Entering directory `/root/R-3.2.3/doc'
make[2]: Entering directory `/root/R-3.2.3/doc/html'
make[2]: Leaving directory `/root/R-3.2.3/doc/html'
make[2]: Entering directory `/root/R-3.2.3/doc/manual'
make[2]: Nothing to be done for `R'.
make[2]: Leaving directory `/root/R-3.2.3/doc/manual'
make[1]: Leaving directory `/root/R-3.2.3/doc'
make[1]: Entering directory `/root/R-3.2.3/etc'
make[1]: Leaving directory `/root/R-3.2.3/etc'
make[1]: Entering directory `/root/R-3.2.3/share'
make[1]: Leaving directory `/root/R-3.2.3/share'
make[1]: Entering directory `/root/R-3.2.3/src'
make[2]: Entering directory `/root/R-3.2.3/src/scripts'
creating src/scripts/R.fe
make[3]: Entering directory `/root/R-3.2.3/src/scripts'
make[3]: Leaving directory `/root/R-3.2.3/src/scripts'
make[2]: Leaving directory `/root/R-3.2.3/src/scripts'
make[2]: Entering directory `/root/R-3.2.3/src/include'
config.status: creating src/include/config.h
config.status: src/include/config.h is unchanged
Rmath.h is unchanged
make[3]: Entering directory `/root/R-3.2.3/src/include/R_ext'
make[3]: Nothing to be done for `R'.
make[3]: Leaving directory `/root/R-3.2.3/src/include/R_ext'
make[2]: Leaving directory `/root/R-3.2.3/src/include'
make[2]: Entering directory `/root/R-3.2.3/src/extra'
make[3]: Entering directory `/root/R-3.2.3/src/extra/blas'
make[4]: Entering directory `/root/R-3.2.3/src/extra/blas'
make[4]: `libRblas.so' is up to date.
make[4]: Leaving directory `/root/R-3.2.3/src/extra/blas'
make[4]: Entering directory `/root/R-3.2.3/src/extra/blas'
/root/R-3.2.3/lib/libRblas.so is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/extra/blas'
make[3]: Leaving directory `/root/R-3.2.3/src/extra/blas'
make[3]: Entering directory `/root/R-3.2.3/src/extra/bzip2'
make[4]: Entering directory `/root/R-3.2.3/src/extra/bzip2'
make[4]: `libbz2.a' is up to date.
make[4]: Leaving directory `/root/R-3.2.3/src/extra/bzip2'
make[3]: Leaving directory `/root/R-3.2.3/src/extra/bzip2'
make[3]: Entering directory `/root/R-3.2.3/src/extra/pcre'
make[4]: Entering directory `/root/R-3.2.3/src/extra/pcre'
make[4]: Leaving directory `/root/R-3.2.3/src/extra/pcre'
make[4]: Entering directory `/root/R-3.2.3/src/extra/pcre'
make[4]: `libpcre.a' is up to date.
make[4]: Leaving directory `/root/R-3.2.3/src/extra/pcre'
make[3]: Leaving directory `/root/R-3.2.3/src/extra/pcre'
make[3]: Entering directory `/root/R-3.2.3/src/extra/zlib'
make[4]: Entering directory `/root/R-3.2.3/src/extra/zlib'
make[4]: `libz.a' is up to date.
make[4]: Leaving directory `/root/R-3.2.3/src/extra/zlib'
make[3]: Leaving directory `/root/R-3.2.3/src/extra/zlib'
make[3]: Entering directory `/root/R-3.2.3/src/extra/tre'
make[4]: Entering directory `/root/R-3.2.3/src/extra/tre'
make[4]: Leaving directory `/root/R-3.2.3/src/extra/tre'
make[4]: Entering directory `/root/R-3.2.3/src/extra/tre'
make[4]: `libtre.a' is up to date.
make[4]: Leaving directory `/root/R-3.2.3/src/extra/tre'
make[3]: Leaving directory `/root/R-3.2.3/src/extra/tre'
make[3]: Entering directory `/root/R-3.2.3/src/extra/xz'
make[4]: Entering directory `/root/R-3.2.3/src/extra/xz'
make[4]: `liblzma.a' is up to date.
make[4]: Leaving directory `/root/R-3.2.3/src/extra/xz'
make[3]: Leaving directory `/root/R-3.2.3/src/extra/xz'
make[2]: Leaving directory `/root/R-3.2.3/src/extra'
make[2]: Entering directory `/root/R-3.2.3/src/appl'
make[3]: Entering directory `/root/R-3.2.3/src/appl'
make[3]: `libappl.a' is up to date.
make[3]: Leaving directory `/root/R-3.2.3/src/appl'
make[2]: Leaving directory `/root/R-3.2.3/src/appl'
make[2]: Entering directory `/root/R-3.2.3/src/nmath'
make[3]: Entering directory `/root/R-3.2.3/src/nmath'
make[3]: `libnmath.a' is up to date.
make[3]: Leaving directory `/root/R-3.2.3/src/nmath'
make[2]: Leaving directory `/root/R-3.2.3/src/nmath'
make[2]: Entering directory `/root/R-3.2.3/src/unix'
make[3]: Entering directory `/root/R-3.2.3/src/unix'
make[3]: `libunix.a' is up to date.
make[3]: Leaving directory `/root/R-3.2.3/src/unix'
make[3]: Entering directory `/root/R-3.2.3/src/unix'
   -g -O2  -L/usr/local/lib64 -DR_HOME='"/root/R-3.2.3"' \
  -o Rscript ./Rscript.c
make[3]: Leaving directory `/root/R-3.2.3/src/unix'
make[2]: Leaving directory `/root/R-3.2.3/src/unix'
make[2]: Entering directory `/root/R-3.2.3/src/main'
make[3]: Entering directory `/root/R-3.2.3/src/main'
make[4]: Entering directory `/root/R-3.2.3/src/main'
/root/R-3.2.3/bin/exec/R is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/main'
make[3]: Leaving directory `/root/R-3.2.3/src/main'
make[2]: Leaving directory `/root/R-3.2.3/src/main'
make[2]: Entering directory `/root/R-3.2.3/src/modules'
make[3]: Entering directory `/root/R-3.2.3/src/modules/internet'
make[4]: Entering directory `/root/R-3.2.3/src/modules/internet'
make[4]: `internet.so' is up to date.
make[4]: Leaving directory `/root/R-3.2.3/src/modules/internet'
make[3]: Leaving directory `/root/R-3.2.3/src/modules/internet'
make[3]: Entering directory `/root/R-3.2.3/src/modules/lapack'
make[4]: Entering directory `/root/R-3.2.3/src/modules/lapack'
make[4]: `libRlapack.so' is up to date.
/root/R-3.2.3/lib/libRlapack.so is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/modules/lapack'
make[4]: Entering directory `/root/R-3.2.3/src/modules/lapack'
make[4]: `lapack.so' is up to date.
make[4]: Leaving directory `/root/R-3.2.3/src/modules/lapack'
make[3]: Leaving directory `/root/R-3.2.3/src/modules/lapack'
make[3]: Entering directory `/root/R-3.2.3/src/modules/X11'
make[4]: Entering directory `/root/R-3.2.3/src/modules/X11'
make[4]: `R_X11.so' is up to date.
make[4]: `R_de.so' is up to date.
make[4]: Leaving directory `/root/R-3.2.3/src/modules/X11'
make[4]: Entering directory `/root/R-3.2.3/src/modules/X11'
/root/R-3.2.3/modules/R_X11.so is unchanged
/root/R-3.2.3/modules/R_de.so is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/modules/X11'
make[3]: Leaving directory `/root/R-3.2.3/src/modules/X11'
make[2]: Leaving directory `/root/R-3.2.3/src/modules'
make[2]: Entering directory `/root/R-3.2.3/src/library'
make[3]: Entering directory `/root/R-3.2.3/src/library/profile'
building system startup profile
make[3]: Leaving directory `/root/R-3.2.3/src/library/profile'
make[3]: Entering directory `/root/R-3.2.3/src/library/translations'
building package 'translations'
make[4]: Entering directory `/root/R-3.2.3/src/library/translations'
make[4]: Leaving directory `/root/R-3.2.3/src/library/translations'
make[3]: Leaving directory `/root/R-3.2.3/src/library/translations'
make[3]: Entering directory `/root/R-3.2.3/src/library/base'
building package 'base'
make[4]: Entering directory `/root/R-3.2.3/src/library/base'
all.R is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/library/base'
make[3]: Leaving directory `/root/R-3.2.3/src/library/base'
make[3]: Entering directory `/root/R-3.2.3/src/library/tools'
building package 'tools'
make[4]: Entering directory `/root/R-3.2.3/src/library/tools'
all.R is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/library/tools'
make[4]: Entering directory `/root/R-3.2.3/src/library/tools'
make[5]: Entering directory `/root/R-3.2.3/src/library/tools/src'
make[6]: Entering directory `/root/R-3.2.3/src/library/tools/src'
../../../../library/tools/libs/tools.so is unchanged
make[6]: Leaving directory `/root/R-3.2.3/src/library/tools/src'
make[5]: Leaving directory `/root/R-3.2.3/src/library/tools/src'
make[4]: Leaving directory `/root/R-3.2.3/src/library/tools'
make[4]: Entering directory `/root/R-3.2.3/src/library/tools'
installing 'sysdata.rda'
make[4]: Leaving directory `/root/R-3.2.3/src/library/tools'
make[3]: Leaving directory `/root/R-3.2.3/src/library/tools'
make[3]: Entering directory `/root/R-3.2.3/src/library/compiler'
building package 'compiler'
make[4]: Entering directory `/root/R-3.2.3/src/library/compiler'
all.R is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/library/compiler'
make[4]: Entering directory `/root/R-3.2.3/src/library/compiler'
make[4]: Nothing to be done for `mklazycomp'.
make[4]: Leaving directory `/root/R-3.2.3/src/library/compiler'
make[3]: Leaving directory `/root/R-3.2.3/src/library/compiler'
make[3]: Entering directory `/root/R-3.2.3/src/library/base'
make[3]: Nothing to be done for `mklazycomp'.
make[3]: Leaving directory `/root/R-3.2.3/src/library/base'
make[3]: Entering directory `/root/R-3.2.3/src/library/tools'
make[3]: Nothing to be done for `mklazycomp'.
make[3]: Leaving directory `/root/R-3.2.3/src/library/tools'
make[3]: Entering directory `/root/R-3.2.3/src/library/utils'
building package 'utils'
make[4]: Entering directory `/root/R-3.2.3/src/library/utils'
all.R is unchanged
make[4]: Nothing to be done for `iconvlist'.
make[4]: Leaving directory `/root/R-3.2.3/src/library/utils'
make[4]: Entering directory `/root/R-3.2.3/src/library/utils'
make[5]: Entering directory `/root/R-3.2.3/src/library/utils/src'
make[6]: Entering directory `/root/R-3.2.3/src/library/utils/src'
../../../../library/utils/libs/utils.so is unchanged
make[6]: Leaving directory `/root/R-3.2.3/src/library/utils/src'
make[5]: Leaving directory `/root/R-3.2.3/src/library/utils/src'
make[4]: Leaving directory `/root/R-3.2.3/src/library/utils'
make[4]: Entering directory `/root/R-3.2.3/src/library/utils'
make[4]: Nothing to be done for `mklazycomp'.
make[4]: Leaving directory `/root/R-3.2.3/src/library/utils'
make[3]: Leaving directory `/root/R-3.2.3/src/library/utils'
make[3]: Entering directory `/root/R-3.2.3/src/library/grDevices'
building package 'grDevices'
make[4]: Entering directory `/root/R-3.2.3/src/library/grDevices'
all.R is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/library/grDevices'
make[4]: Entering directory `/root/R-3.2.3/src/library/grDevices'
make[5]: Entering directory `/root/R-3.2.3/src/library/grDevices/src'
make[6]: Entering directory `/root/R-3.2.3/src/library/grDevices/src'
../../../../library/grDevices/libs/grDevices.so is unchanged
make[6]: Leaving directory `/root/R-3.2.3/src/library/grDevices/src'
make[5]: Leaving directory `/root/R-3.2.3/src/library/grDevices/src'
make[4]: Leaving directory `/root/R-3.2.3/src/library/grDevices'
make[4]: Entering directory `/root/R-3.2.3/src/library/grDevices'
make[4]: Nothing to be done for `mklazycomp'.
make[4]: Leaving directory `/root/R-3.2.3/src/library/grDevices'
make[3]: Leaving directory `/root/R-3.2.3/src/library/grDevices'
make[3]: Entering directory `/root/R-3.2.3/src/library/graphics'
building package 'graphics'
make[4]: Entering directory `/root/R-3.2.3/src/library/graphics'
all.R is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/library/graphics'
make[4]: Entering directory `/root/R-3.2.3/src/library/graphics'
make[5]: Entering directory `/root/R-3.2.3/src/library/graphics/src'
make[6]: Entering directory `/root/R-3.2.3/src/library/graphics/src'
../../../../library/graphics/libs/graphics.so is unchanged
make[6]: Leaving directory `/root/R-3.2.3/src/library/graphics/src'
make[5]: Leaving directory `/root/R-3.2.3/src/library/graphics/src'
make[4]: Leaving directory `/root/R-3.2.3/src/library/graphics'
make[4]: Entering directory `/root/R-3.2.3/src/library/graphics'
make[4]: Nothing to be done for `mklazycomp'.
make[4]: Leaving directory `/root/R-3.2.3/src/library/graphics'
make[3]: Leaving directory `/root/R-3.2.3/src/library/graphics'
make[3]: Entering directory `/root/R-3.2.3/src/library/stats'
building package 'stats'
make[4]: Entering directory `/root/R-3.2.3/src/library/stats'
all.R is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/library/stats'
make[4]: Entering directory `/root/R-3.2.3/src/library/stats'
make[5]: Entering directory `/root/R-3.2.3/src/library/stats/src'
make[6]: Entering directory `/root/R-3.2.3/src/library/stats/src'
../../../../library/stats/libs/stats.so is unchanged
make[6]: Leaving directory `/root/R-3.2.3/src/library/stats/src'
make[5]: Leaving directory `/root/R-3.2.3/src/library/stats/src'
make[4]: Leaving directory `/root/R-3.2.3/src/library/stats'
make[4]: Entering directory `/root/R-3.2.3/src/library/stats'
make[4]: Nothing to be done for `mklazycomp'.
make[4]: Leaving directory `/root/R-3.2.3/src/library/stats'
make[3]: Leaving directory `/root/R-3.2.3/src/library/stats'
make[3]: Entering directory `/root/R-3.2.3/src/library/datasets'
building package 'datasets'
make[4]: Entering directory `/root/R-3.2.3/src/library/datasets'
make[4]: Leaving directory `/root/R-3.2.3/src/library/datasets'
make[3]: Leaving directory `/root/R-3.2.3/src/library/datasets'
make[3]: Entering directory `/root/R-3.2.3/src/library/methods'
building package 'methods'
make[4]: Entering directory `/root/R-3.2.3/src/library/methods'
all.R is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/library/methods'
make[4]: Entering directory `/root/R-3.2.3/src/library/methods'
make[5]: Entering directory `/root/R-3.2.3/src/library/methods/src'
make[6]: Entering directory `/root/R-3.2.3/src/library/methods/src'
../../../../library/methods/libs/methods.so is unchanged
make[6]: Leaving directory `/root/R-3.2.3/src/library/methods/src'
make[5]: Leaving directory `/root/R-3.2.3/src/library/methods/src'
make[4]: Leaving directory `/root/R-3.2.3/src/library/methods'
make[4]: Entering directory `/root/R-3.2.3/src/library/methods'
make[4]: Nothing to be done for `RfilesLazy'.
make[4]: Leaving directory `/root/R-3.2.3/src/library/methods'
make[3]: Leaving directory `/root/R-3.2.3/src/library/methods'
make[3]: Entering directory `/root/R-3.2.3/src/library/grid'
building package 'grid'
make[4]: Entering directory `/root/R-3.2.3/src/library/grid'
all.R is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/library/grid'
make[4]: Entering directory `/root/R-3.2.3/src/library/grid'
make[5]: Entering directory `/root/R-3.2.3/src/library/grid/src'
make[6]: Entering directory `/root/R-3.2.3/src/library/grid/src'
../../../../library/grid/libs/grid.so is unchanged
make[6]: Leaving directory `/root/R-3.2.3/src/library/grid/src'
make[5]: Leaving directory `/root/R-3.2.3/src/library/grid/src'
make[4]: Leaving directory `/root/R-3.2.3/src/library/grid'
make[4]: Entering directory `/root/R-3.2.3/src/library/grid'
make[4]: Nothing to be done for `mklazycomp'.
make[4]: Leaving directory `/root/R-3.2.3/src/library/grid'
make[3]: Leaving directory `/root/R-3.2.3/src/library/grid'
make[3]: Entering directory `/root/R-3.2.3/src/library/splines'
building package 'splines'
make[4]: Entering directory `/root/R-3.2.3/src/library/splines'
all.R is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/library/splines'
make[4]: Entering directory `/root/R-3.2.3/src/library/splines'
make[5]: Entering directory `/root/R-3.2.3/src/library/splines/src'
make[6]: Entering directory `/root/R-3.2.3/src/library/splines/src'
../../../../library/splines/libs/splines.so is unchanged
make[6]: Leaving directory `/root/R-3.2.3/src/library/splines/src'
make[5]: Leaving directory `/root/R-3.2.3/src/library/splines/src'
make[4]: Leaving directory `/root/R-3.2.3/src/library/splines'
make[4]: Entering directory `/root/R-3.2.3/src/library/splines'
make[4]: Nothing to be done for `mklazycomp'.
make[4]: Leaving directory `/root/R-3.2.3/src/library/splines'
make[3]: Leaving directory `/root/R-3.2.3/src/library/splines'
make[3]: Entering directory `/root/R-3.2.3/src/library/stats4'
building package 'stats4'
make[4]: Entering directory `/root/R-3.2.3/src/library/stats4'
all.R is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/library/stats4'
make[4]: Entering directory `/root/R-3.2.3/src/library/stats4'
make[4]: Nothing to be done for `mklazycomp'.
make[4]: Leaving directory `/root/R-3.2.3/src/library/stats4'
make[3]: Leaving directory `/root/R-3.2.3/src/library/stats4'
make[3]: Entering directory `/root/R-3.2.3/src/library/tcltk'
building package 'tcltk'
../../../library/tcltk/R/tcltk is unchanged
make[4]: Entering directory `/root/R-3.2.3/src/library/tcltk'
make[4]: Leaving directory `/root/R-3.2.3/src/library/tcltk'
make[3]: Leaving directory `/root/R-3.2.3/src/library/tcltk'
make[3]: Entering directory `/root/R-3.2.3/src/library/parallel'
building package 'parallel'
make[4]: Entering directory `/root/R-3.2.3/src/library/parallel'
all.R is unchanged
make[4]: Leaving directory `/root/R-3.2.3/src/library/parallel'
make[4]: Entering directory `/root/R-3.2.3/src/library/parallel'
make[5]: Entering directory `/root/R-3.2.3/src/library/parallel/src'
make[6]: Entering directory `/root/R-3.2.3/src/library/parallel/src'
../../../../library/parallel/libs/parallel.so is unchanged
make[6]: Leaving directory `/root/R-3.2.3/src/library/parallel/src'
make[5]: Leaving directory `/root/R-3.2.3/src/library/parallel/src'
make[4]: Leaving directory `/root/R-3.2.3/src/library/parallel'
make[4]: Entering directory `/root/R-3.2.3/src/library/parallel'
make[4]: Nothing to be done for `mklazycomp'.
make[4]: Leaving directory `/root/R-3.2.3/src/library/parallel'
make[3]: Leaving directory `/root/R-3.2.3/src/library/parallel'
make[3]: Entering directory `/root/R-3.2.3/src/library/base'
make[3]: Leaving directory `/root/R-3.2.3/src/library/base'
installing parsed NAMESPACE files
make[2]: Leaving directory `/root/R-3.2.3/src/library'
make[1]: Leaving directory `/root/R-3.2.3/src'
make[1]: Entering directory `/root/R-3.2.3/tests'
make[1]: Nothing to be done for `R'.
make[1]: Leaving directory `/root/R-3.2.3/tests'
make[1]: Entering directory `/root/R-3.2.3/doc'
'pdflatex' is needed to make NEWS.pdf but is missing on your system.
make[2]: Entering directory `/root/R-3.2.3/doc/manual'
'texi2any' v5.1 or later needed to make HTML docs but missing on your system.
file R-FAQ.html will be missing and linked from CRAN
creating doc/manual/version.texi
'texi2any' v5.1 or later needed to make HTML docs but missing on your system.
file R-admin.html will be missing and linked from CRAN
'texi2any' v5.1 or later needed to make HTML docs but missing on your system.
file R-data.html will be missing and linked from CRAN
'texi2any' v5.1 or later needed to make HTML docs but missing on your system.
file R-exts.html will be missing and linked from CRAN
'texi2any' v5.1 or later needed to make HTML docs but missing on your system.
file R-intro.html will be missing and linked from CRAN
'texi2any' v5.1 or later needed to make HTML docs but missing on your system.
file R-ints.html will be missing and linked from CRAN
'texi2any' v5.1 or later needed to make HTML docs but missing on your system.
file R-lang.html will be missing and linked from CRAN
make[3]: Entering directory `/root/R-3.2.3/doc/html'
make[3]: Leaving directory `/root/R-3.2.3/doc/html'
make[2]: Leaving directory `/root/R-3.2.3/doc/manual'
make[1]: Leaving directory `/root/R-3.2.3/doc'
make[1]: Entering directory `/root/R-3.2.3/src/library'
make[2]: Entering directory `/root/R-3.2.3/src/library'
installing parsed Rd
make[3]: Entering directory `/root/R-3.2.3/src/library'
  base
  stats
  utils
  methods
  graphics
  grDevices
  datasets
  grid
  tools
  tcltk
  splines
  stats4
  compiler
  parallel
make[3]: Leaving directory `/root/R-3.2.3/src/library'
make[2]: Leaving directory `/root/R-3.2.3/src/library'
make[2]: Entering directory `/root/R-3.2.3/src/library'
building/updating package metadata ...
make[2]: Leaving directory `/root/R-3.2.3/src/library'
make[2]: Entering directory `/root/R-3.2.3/src/library'
writing package indices
make[3]: Entering directory `/root/R-3.2.3/src/library'
make[3]: Leaving directory `/root/R-3.2.3/src/library'
make[2]: Leaving directory `/root/R-3.2.3/src/library'
make[1]: Leaving directory `/root/R-3.2.3/src/library'
make[1]: Entering directory `/root/R-3.2.3/src/library/Recommended'
make[2]: Entering directory `/root/R-3.2.3/src/library/Recommended'
make[2]: `stamp-recommended' is up to date.
make[2]: Leaving directory `/root/R-3.2.3/src/library/Recommended'
make[1]: Leaving directory `/root/R-3.2.3/src/library/Recommended'
make[1]: Entering directory `/root/R-3.2.3/src/library'
'pdflatex' is needed to make vignettes but is missing on your system.
make[1]: Leaving directory `/root/R-3.2.3/src/library'
make[1]: Entering directory `/root/R-3.2.3'
configuring Java ...
Java interpreter : /usr/bin/java
Java version     : 1.8.0_65
Java home path   : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.65-3.b17.el7.x86_64/jre
Java compiler    : /usr/bin/javac
Java headers gen.: /usr/bin/javah
Java archive tool: /usr/bin/jar

trying to compile and link a JNI program
detected JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux
detected JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
make[2]: Entering directory `/tmp/Rjavareconf.W2Gi6m'
ux -I/usr/local/include    -fpic  -g -O2  -c conftest.c -o conftest.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o conftest.so conftest.o -L/usr/lib/jvm/java-1.8.0-openjdk-1.8.0.65-3.b17.el7.x86_64/jre/lib/amd64/server -ljvm
make[2]: Leaving directory `/tmp/Rjavareconf.W2Gi6m'


JAVA_HOME        : /usr/lib/jvm/java-1.8.0-openjdk-1.8.0.65-3.b17.el7.x86_64/jre
Java library path: $(JAVA_HOME)/lib/amd64/server
JNI cpp flags    : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux
JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm
Updating Java configuration in /root/R-3.2.3
Done.

make[1]: Leaving directory `/root/R-3.2.3'
[root@localhost R-3.2.3]# make install
mkdir -p -- /usr/local/lib64/R
make[1]: Entering directory `/root/R-3.2.3/m4'
make[1]: Nothing to be done for `install'.
make[1]: Leaving directory `/root/R-3.2.3/m4'
make[1]: Entering directory `/root/R-3.2.3/tools'
make[1]: Nothing to be done for `install'.
make[1]: Leaving directory `/root/R-3.2.3/tools'
make[1]: Entering directory `/root/R-3.2.3/doc'
installing doc ...
mkdir -p -- /usr/local/lib64/R/doc
make[2]: Entering directory `/root/R-3.2.3/doc/html'
installing doc/html ...
mkdir -p -- /usr/local/lib64/R/doc/html
make[2]: Leaving directory `/root/R-3.2.3/doc/html'
make[2]: Entering directory `/root/R-3.2.3/doc/manual'
installing doc/manual ...
mkdir -p -- /usr/local/lib64/R/doc/manual
mkdir -p -- /usr/local/lib64/R/doc/manual/images
make[2]: Leaving directory `/root/R-3.2.3/doc/manual'
make[1]: Leaving directory `/root/R-3.2.3/doc'
make[1]: Entering directory `/root/R-3.2.3/etc'
mkdir -p -- /usr/local/lib64/R/etc
installing etc ...
make[1]: Leaving directory `/root/R-3.2.3/etc'
make[1]: Entering directory `/root/R-3.2.3/share'
installing share ...
mkdir -p -- /usr/local/lib64/R/share
mkdir -p -- /usr/local/lib64/R/share/R
mkdir -p -- /usr/local/lib64/R/share/dictionaries
mkdir -p -- /usr/local/lib64/R/share/encodings
mkdir -p -- /usr/local/lib64/R/share/java
mkdir -p -- /usr/local/lib64/R/share/licenses
mkdir -p -- /usr/local/lib64/R/share/make
mkdir -p -- /usr/local/lib64/R/share/Rd
mkdir -p -- /usr/local/lib64/R/share/Rd/macros
mkdir -p -- /usr/local/lib64/R/share/sh
mkdir -p -- /usr/local/lib64/R/share/texmf
mkdir -p -- /usr/local/lib64/R/share/texmf/bibtex/bib
mkdir -p -- /usr/local/lib64/R/share/texmf/bibtex/bst
mkdir -p -- /usr/local/lib64/R/share/texmf/tex/latex
make[1]: Leaving directory `/root/R-3.2.3/share'
make[1]: Entering directory `/root/R-3.2.3/src'
make[2]: Entering directory `/root/R-3.2.3/src/scripts'
mkdir -p -- /usr/local/lib64/R/bin
make[2]: Leaving directory `/root/R-3.2.3/src/scripts'
make[2]: Entering directory `/root/R-3.2.3/src/include'
mkdir -p -- /usr/local/lib64/R/include
make[3]: Entering directory `/root/R-3.2.3/src/include/R_ext'
mkdir -p -- /usr/local/lib64/R/include/R_ext
make[3]: Leaving directory `/root/R-3.2.3/src/include/R_ext'
make[2]: Leaving directory `/root/R-3.2.3/src/include'
make[2]: Entering directory `/root/R-3.2.3/src/extra'
make[3]: Entering directory `/root/R-3.2.3/src/extra/blas'
mkdir -p -- /usr/local/lib64/R/lib
make[3]: Leaving directory `/root/R-3.2.3/src/extra/blas'
make[3]: Entering directory `/root/R-3.2.3/src/extra/bzip2'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/root/R-3.2.3/src/extra/bzip2'
make[3]: Entering directory `/root/R-3.2.3/src/extra/pcre'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/root/R-3.2.3/src/extra/pcre'
make[3]: Entering directory `/root/R-3.2.3/src/extra/tre'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/root/R-3.2.3/src/extra/tre'
make[3]: Entering directory `/root/R-3.2.3/src/extra/xdr'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/root/R-3.2.3/src/extra/xdr'
make[3]: Entering directory `/root/R-3.2.3/src/extra/xz'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/root/R-3.2.3/src/extra/xz'
make[3]: Entering directory `/root/R-3.2.3/src/extra/zlib'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/root/R-3.2.3/src/extra/zlib'
make[3]: Entering directory `/root/R-3.2.3/src/extra/intl'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/root/R-3.2.3/src/extra/intl'
make[2]: Leaving directory `/root/R-3.2.3/src/extra'
make[2]: Entering directory `/root/R-3.2.3/src/appl'
make[2]: Nothing to be done for `install'.
make[2]: Leaving directory `/root/R-3.2.3/src/appl'
make[2]: Entering directory `/root/R-3.2.3/src/nmath'
make[2]: Nothing to be done for `install'.
make[2]: Leaving directory `/root/R-3.2.3/src/nmath'
make[2]: Entering directory `/root/R-3.2.3/src/unix'
gcc -std=gnu99 -I. -I../../src/include -I../../src/include  -I/usr/local/include -DHAVE_CONFIG_H    -g -O2  -L/usr/local/lib64 -DR_HOME='"/usr/local/lib64/R"' \
  -o Rscript ./Rscript.c
make[2]: Leaving directory `/root/R-3.2.3/src/unix'
make[2]: Entering directory `/root/R-3.2.3/src/main'
mkdir -p -- /usr/local/lib64/R/bin/exec
make[3]: Entering directory `/root/R-3.2.3/src/main'
make[3]: Leaving directory `/root/R-3.2.3/src/main'
make[2]: Leaving directory `/root/R-3.2.3/src/main'
make[2]: Entering directory `/root/R-3.2.3/src/modules'
make[3]: Entering directory `/root/R-3.2.3/src/modules/internet'
mkdir -p -- /usr/local/lib64/R/modules
make[3]: Leaving directory `/root/R-3.2.3/src/modules/internet'
make[3]: Entering directory `/root/R-3.2.3/src/modules/lapack'
make[3]: Leaving directory `/root/R-3.2.3/src/modules/lapack'
make[3]: Entering directory `/root/R-3.2.3/src/modules/X11'
make[3]: Leaving directory `/root/R-3.2.3/src/modules/X11'
make[2]: Leaving directory `/root/R-3.2.3/src/modules'
make[2]: Entering directory `/root/R-3.2.3/src/library'
mkdir -p -- /usr/local/lib64/R/library
installing packages ...
  building HTML index ...
make[2]: Leaving directory `/root/R-3.2.3/src/library'
make[1]: Leaving directory `/root/R-3.2.3/src'
make[1]: Entering directory `/root/R-3.2.3/tests'
make[1]: Nothing to be done for `install'.
make[1]: Leaving directory `/root/R-3.2.3/tests'
[root@localhost R-3.2.3]# R

R version 3.2.3 (2015-12-10) -- "Wooden Christmas-Tree"
Copyright (C) 2015 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

  Natural language support but running in an English locale

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> 6+9
[1] 15